Uracil
- Formula: C4H4N2O2
- Molecular weight: 112.0868
- IUPAC Standard InChIKey: ISAKRJDGNUQOIC-UHFFFAOYSA-N
- CAS Registry Number: 66-22-8
- Chemical structure:
This structure is also available as a 2d Mol file - Other names: 2,4(1H,3H)-Pyrimidinedione; Pirod; Pyrod; RU 12709; Ura; 2,4-Dihydroxypyrimidine; 2,4-Dioxopyrimidine; 2,4-Pyrimidinediol; 2,4-Pyrimidinedione; 2,6-Dihydroxypyrimidine; Hybar X; 1H-Pyrimidine-2,4-dione; 2-Hydroxy-4(1H)-pyrimidinone; 2-Hydroxy-4(3H)-pyrimidinone; 2,4-Dioxypyrimidine; 4-Hydroxy-2(1H)-pyrimidinone; NSC 3970
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Gas phase ion energetics data
Go To: Top, References, Notes
Data compilation copyright by the U.S. Secretary of Commerce on behalf of the U.S.A. All rights reserved.
Data evaluated as indicated in comments:
HL - Edward P. Hunter and Sharon G. Lias
Data compiled as indicated in comments:
MM - Michael M. Meot-Ner (Mautner)
LLK - Sharon G. Lias, Rhoda D. Levin, and Sherif A. Kafafi
RDSH - Henry M. Rosenstock, Keith Draxl, Bruce W. Steiner, and John T. Herron
B - John E. Bartmess
Quantity | Value | Units | Method | Reference | Comment |
---|---|---|---|---|---|
Proton affinity (review) | 208.6 | kcal/mol | N/A | Hunter and Lias, 1998 | HL |
Quantity | Value | Units | Method | Reference | Comment |
Gas basicity | 201.2 | kcal/mol | N/A | Hunter and Lias, 1998 | HL |
Electron affinity determinations
EA (eV) | Method | Reference | Comment |
---|---|---|---|
0.07502 | N/A | Desfrancois, Abdoul-Carime, et al., 1999 | B |
0.0860 ± 0.0080 | LPES | Schiedt, Weinkauf, et al., 1998 | B |
0.054 ± 0.035 | N/A | Desfrancois, Abdoul-Carime, et al., 1996 | B |
0.0930 ± 0.0070 | LPES | Hendricks, Lyapustina, et al., 1996 | Aflatooni, Gallup, et al., 1998: vertical attachment EA = -0.22 eV; B |
2.49 ± 0.10 | LPES | Li, Bowen, et al., 2007 | valence state of rare tautomer(N3-H to C5) inferred from calculations; B |
Proton affinity at 298K
Proton affinity (kcal/mol) | Reference | Comment |
---|---|---|
205. | Wolken and Turecek, 2000 | PA calculated by B3YLP, MP2, QCSID, QCISD(T)6-31G(d,p) to 6-311+G(3df,2p) methods. The results, and comparison with experimental PA of thymine suggest the cited value, probbaly more accurate than 1975 Wilson and McCoskey bracketing value.; MM |
Ionization energy determinations
IE (eV) | Method | Reference | Comment |
---|---|---|---|
9.2 | PE | Yu, O'Donnell, et al., 1981 | LLK |
9.4 ± 0.1 | EI | Verkin, Sukodub, et al., 1976 | LLK |
9.53 ± 0.02 | EI | Zaretskii, Sadovskaya, et al., 1971 | LLK |
9.8 ± 0.1 | EI | Lifschitz, Bergmann, et al., 1967 | RDSH |
9.68 | PE | Palmer, Simpson, et al., 1980 | Vertical value; LLK |
9.60 | PE | Dougherty, Wittel, et al., 1976 | Vertical value; LLK |
9.45 | PE | Lauer, Schafer, et al., 1975 | Vertical value; LLK |
9.50 ± 0.03 | PE | Hush and Cheung, 1975 | Vertical value; LLK |
9.59 | PE | Padva, LeBreton, et al., 1974 | Vertical value; LLK |
References
Go To: Top, Gas phase ion energetics data, Notes
Data compilation copyright by the U.S. Secretary of Commerce on behalf of the U.S.A. All rights reserved.
Hunter and Lias, 1998
Hunter, E.P.; Lias, S.G.,
Evaluated Gas Phase Basicities and Proton Affinities of Molecules: An Update,
J. Phys. Chem. Ref. Data, 1998, 27, 3, 413-656, https://doi.org/10.1063/1.556018
. [all data]
Desfrancois, Abdoul-Carime, et al., 1999
Desfrancois, C.; Abdoul-Carime, H.; Carles, S.; Periquet, V.; Schermann, J.P.; Smith, D.M.A.; Adamowicz, L.,
Experimental and theoretical ab initio study of the influence of N-methylation on the dipole-bound electron affinities of thymine and uracil,
J. Chem. Phys., 1999, 110, 24, 11876-11883, https://doi.org/10.1063/1.479175
. [all data]
Schiedt, Weinkauf, et al., 1998
Schiedt, J.; Weinkauf, R.; Neumark, D.M.; Schlag, E.W.,
Anion spectroscopy of uracil, thymine and the amino-oxo and amino-hydroxy tautomers of cytosine and their water clusters,
Chem. Phys., 1998, 239, 1-3, 511-524, https://doi.org/10.1016/S0301-0104(98)00361-9
. [all data]
Desfrancois, Abdoul-Carime, et al., 1996
Desfrancois, C.; Abdoul-Carime, H.; Schermann, J.P.,
Electron Attachment to Isolated Nucleic Acid Bases,
J. Chem. Phys., 1996, 104, 19, 7792, https://doi.org/10.1063/1.471484
. [all data]
Hendricks, Lyapustina, et al., 1996
Hendricks, J.H.; Lyapustina, S.A.; de Clercq, H.L.; Snodgrass, J.T.; Bowen, K.H.,
Dipole bound, nucleic Acid Base Anions Studied via Negative Ion Photoelectron Spectroscopy,
J. Chem. Phys., 1996, 104, 19, 7788, https://doi.org/10.1063/1.471482
. [all data]
Aflatooni, Gallup, et al., 1998
Aflatooni, K.; Gallup, G.A.; Burrows, P.D.,
Electron Attachment Energies of the DNA Bases,
J. Phys. Chem., 1998, 102, 31, 6205, https://doi.org/10.1021/jp980865n
. [all data]
Li, Bowen, et al., 2007
Li, X.; Bowen, K.H.; Haranczyk, M.; Bachorz, R.A.; Mazurkiewicz, K.; Rak, J.; Gutowski, M.,
Photoelectron spectroscopy of adiabatically bound valence anions of rare tautomers of the nucleic acid bases,
J. Chem. Phys., 2007, 127, 17, 174309, https://doi.org/10.1063/1.2795719
. [all data]
Wolken and Turecek, 2000
Wolken, J.K.; Turecek, F.,
Proton affinity of uracil. A computational study of protonation sites,
J. Am. Soc. Mass Spectrom., 2000, 11, 1065. [all data]
Yu, O'Donnell, et al., 1981
Yu, C.; O'Donnell, T.J.; LeBreton, P.R.,
Ultraviolet photoelectron studies of volatile nucleoside models. Vertical ionization potential measurements of methylated uridine, thymidine, cytidine, and adenosine,
J. Phys. Chem., 1981, 85, 3851. [all data]
Verkin, Sukodub, et al., 1976
Verkin, B.I.; Sukodub, L.F.; Yanson, I.K.,
Ionization potentials of nitrogenous bases of of nucleic acids,
Dokl. Akad. Nauk SSSR, 1976, 228, 1452. [all data]
Zaretskii, Sadovskaya, et al., 1971
Zaretskii, V.I.; Sadovskaya, V.L.; Wulfson, N.S.; Sizoy, V.F.; Merimson, V.G.,
Mass spectrometry of steroid systems-XXI. Appearance and ionization potentials for the stereoisomers of the D-homoestrane series,
Org. Mass Spectrom., 1971, 5, 1179. [all data]
Lifschitz, Bergmann, et al., 1967
Lifschitz, C.; Bergmann, E.D.; Pullman, B.,
The ionization potentials of biological purines and pyrimidines,
Tetrahedron Lett., 1967, 4583. [all data]
Palmer, Simpson, et al., 1980
Palmer, M.H.; Simpson, I.; Platenkamp, R.J.,
The electronic structure of flavin derivatives,
J. Mol. Struct., 1980, 66, 243. [all data]
Dougherty, Wittel, et al., 1976
Dougherty, D.; Wittel, K.; Meeks, J.; McGlynn, S.P.,
Photoelectron spectroscopy of carbonyls. Ureas, uracils, and thymine,
J. Am. Chem. Soc., 1976, 98, 3815. [all data]
Lauer, Schafer, et al., 1975
Lauer, G.; Schafer, W.; Schweig, A.,
Functional subunits in the nucleic acid bases uracil and thymine,
Tetrahedron Lett., 1975, 45, 3939. [all data]
Hush and Cheung, 1975
Hush, N.S.; Cheung, A.S.,
Ionization potentials and donor properties of nucleic acid bases and related compounds,
Chem. Phys. Lett., 1975, 34, 11. [all data]
Padva, LeBreton, et al., 1974
Padva, A.; LeBreton, P.R.; Dinerstein, R.J.; Ridyard, J.N.A.,
UV photoelectron studies of biological pyrimidines: The electronic structure of uracil,
Biochem. Biophys. Res. Commun., 1974, 60, 1262. [all data]
Notes
Go To: Top, Gas phase ion energetics data, References
- Symbols used in this document:
EA Electron affinity - Data from NIST Standard Reference Database 69: NIST Chemistry WebBook
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